Biblio

Found 54 results
2025
B. Sacli-Bilmez, Bas, A., Danyeli, A. Erşen, Yakicier, C. M., M. Pamir, N., Özduman, K., Dincer, A., and Esin, O. - I., “Detecting IDH and TERTp mutations in diffuse gliomas using 1H-MRS with attention deep-shallow networks”, Computers in Biology and Medicine, vol. 186, 2025.
A. Kıçik, Bayram, A., Erdoğdu, E., Kurt, E., Saridede, D. B., Cengiz, S., Bilgiç, B., Hanagasi, A. H., Ozturk-Isik, E., Gürvit, H., Tüzün, E., and Demiralp, T., “Investigation of symptom-specific functional connectivity patterns in Parkinson’s disease”, Neurological Sciences, vol. 46, 2025.
H. Ayaz, Sümer-Arpak, E., Öztürk, E. Işık, Booth, C. T., Tormey, D., McLoughlin, I., and Unnikrishnan, S., “Post-hoc eXplainable AI methods for analyzing medical images of gliomas (— A review for clinical applications)”, Computers in Biology and Medicine, vol. 196/A, 2025.
J. Lefort-Besnard, Pron, A., Clement, P., Barker, G., Erez, Y., Fernández-Seara, M. A., Feyzioglu, S. B., Hartman, S., Iglesias-Rey, R., Keil, V., Mitrović, T., Nechifor, R. E., Ozturk-Isik, E., Passarinho, C., Petrušić, I., A. Trbalić, Š., Sollmann, N., Thust, S. C., Turhan, G., Warnert, E. A. H., Heunis, S., and Maumet, C., “Which infrastructure can I use to share human neuroimaging data? Recommendations for EU researchers based on a survey and literature review”, Aperture Neuro, vol. 5, no. SI 2, 2025.
2024
M. Ş. Erdoğan, Arpak, E. S., Keles, C. S. K., Villagra, F., Ozturk-Isik, E., Afşar, N., Yucesoy, C. A., Mur, L. A. J., Akanyeti, O., and Saybaşılı, H., “Biochemical, biomechanical and imaging biomarkers of ischemic stroke: Time for integrative thinking”, European Journal of Neuroscience, 2024.
B. Padrela, Mahroo, A., Tee, M., Sneve, M. H., Moyaert, P., Geier, O., Kuijer, J. P. A., Beun, S., Nordhøy, W., Zhu, Y. D., Buck, M. A., Hoinkiss, D. C., Konstandin, S., Huber, J., Wiersinga, J., Rikken, R., de Leeuw, D., Grydeland, H., Tippett, L., Cawston, E. E., Ozturk-Isik, E., Linn, J., Brandt, M., Tijms, B. M., van de Giessen, E. M., Muller, M., Fjell, A., Walhovd, K., Bjørnerud, A., Pålhaugen, L., Selnes, P., Clement, P., Achten, E., Anazodo, U., Barkhof, F., Hilal, S., Fladby, T., Eickel, K., Morgan, C., Thomas, D. L., Petr, J., Günther, M., and Mutsaerts, H. J. M. M., “Developing blood-brain barrier arterial spin labelling as a non-invasive early biomarker of Alzheimer's disease (DEBBIE-AD): a prospective observational multicohort study protocol”, BMJ Open, 2024.
B. Buz-Yalug, Turhan, G., Cetin, A. Irem, Dindar, S. Samet, Danyeli, A. Ersen, Yakicier, C., M. Pamir, N., Ozduman, K., Dincer, A., and Isik, E. Ozturk, “Identification of IDH and TERTp mutations using dynamic susceptibility contrast MRI with deep learning in 162 gliomas”, European Journal of Radiology, 2024.
E. Aydın, Durmuş, F., Torlak, N., Oria, M., N Bayazıt, G., Ozturk-Isik, E., Aslanyürek, B., and Peiro, J. L., “Pulmonary vasculature development in congenital diaphragmatic hernia: a novel automated quantitative imaging analysis”, Pediatric Surgery International, 2024.
Q. Lyu, Parreno-Centeno, M., Papa, J. P., Ozturk-Isik, E., Booth, T. C., and Costen, F., “SurvNet: A low-complexity convolutional neural network for survival time classification of patients with glioblastoma”, Heliyon, 2024.
S. Azamat, Buz-Yalug, B., Dindar, S. Samet, Tan, K. Yilmaz, Ozcan, A., Can, O., Danyeli, A. Ersen, M. Pamir, N., Dincer, A., Ozduman, K., and Ozturk-Isik, E., “Susceptibility-Weighted MRI for Predicting NF-2 Mutations and S100 Protein Expression in Meningiomas”, Diagnostics, 2024.
2023
L. Hirschler, Sollmann, N., Schmitz-Abecassis, B., Pinto, J., Arzanforoosh, F., Barkhof, F., Booth, T., Calvo-Imirizaldu, M., Cassia, G., Chmelik, M., Clement, P., Ercan, E., Fernández-Seara, M. A., Furtner, J., Fuster-Garcia, E., Grech-Sollars, M., Guven, N. Tugay, Hatay, G. Hale, Karami, G., Keil, V. C., Kim, M., Koekkoek, J. A. F., Kukran, S., Mancini, L., Nechifor, R. Emanuel, Ozcan, A., Ozturk-Isik, E., Piskin, S., Schmainda, K., Svensson, S. F., Tseng, C. - H., Unnikrishnan, S., Vos, F., Warnert, E., Zhao, M. Y., Jancalek, R., Nunes, T., Emblem, K. E., Smits, M., Petr, J., and Hangel, G., “Advanced MR Techniques for Preoperative Glioma Characterization: Part 1”, Journal of Magnetic Resonance Imaging, vol. 57, pp. 1655-1675, 2023.
G. Hangel, Schmitz-Abecassis, B., Sollmann, N., Pinto, J., Arzanforoosh, F., Barkhof, F., Booth, T., Calvo-Imirizaldu, M., Cassia, G., Chmelik, M., Clement, P., Ercan, E., Fernández-Seara, M. A., Furtner, J., Fuster-Garcia, E., Grech-Sollars, M., N. Guven, T., Hatay, G. Hale, Karami, G., Keil, V. C., Kim, M., Koekkoek, J. A. F., Kukran, S., Mancini, L., Nechifor, R. Emanuel, Ozcan, A., Ozturk-Isik, E., Piskin, S., Schmainda, K. M., Svensson, S. F., Tseng, C. - H., Unnikrishnan, S., Vos, F., Warnert, E., Zhao, M. Y., Jancalek, R., Nunes, T., Hirschler, L., Smits, M., Petr, J., and Emblem, K. E., “Advanced MR Techniques for Preoperative Glioma Characterization: Part 2”, Journal of Magnetic Resonance Imaging, vol. 57, pp. 1676-1695, 2023.
H. Halilibrahimoğlu, Polat, K., Keskin, S., Genc, O., Aslan, O., Ozturk-Isik, E., Yakicier, C., A. Danyeli, E., Pamir, M. N., Özduman, K., Dincer, A., and Ozcan, A., “Associating IDH and TERT Mutations in Glioma withDiffusion Anisotropy in Normal-Appearing White Matter”, AJNR, vol. 44(5), 2023.
M. Yildirim, Kovalyk, X., Scholtz, P., Schütz, M., Lindemeyer, J., Lamerichs, R., Grüll, H., and Esin, O. - I., “Fast 19F spectroscopic imaging with pseudo-spiral k-space sampling”, NMR in Biomedicine, vol. 37(4), 2023.
B. Saclı-Bılmez, Firat, Z., Topcuoglu, O. M., Yaltirik, K., Ture, U., and Ozturk-Isik, E., “Identifying overall survival in 98 glioblastomas using VASARI features at 3T”, Clinical Imaging, vol. 93, pp. 86-92, 2023.
B. Sacli-Bilmez, Danyeli, A. Erşen, M. Yakicier, C., Aras, F. Kaan, M. Pamir, N., Özduman, K., Dincer, A., and Ozturk-Isik, E., “Magnetic resonance spectroscopic correlates of progression free and overall survival in “glioblastoma, IDH-wildtype, WHO grade-4””, Frontiers in Neuroscience, vol. 17, 2023.
G. Hale Hatay and Ozturk-Isik, E., “Optimized multi-voxel TE-averaged PRESS for glutamate detection in the human brain at 3T”, Journal of Magnetic Resonance, 2023.
U. Ay, Yıldırım, Z., Emel, E., Kicik, A., Esin, O. - I., Demiralp, T., and Gürvit, H., “Shrinkage of olfactory amygdala connotes cognitive impairment in patients with Parkinson's disease”, Cognitive Neurodynamics, vol. 17(5), 2023.
2022
H. Kilic, Sahin, S., Toprak, M. Filiz, Hatay, G. Hale, Yilmaz, K., Adrovic, A., Barut, K., Isik, E. Ozturk, Tuzun, E., Kizilkilic, O., Saltik, S., and Kasapcopur, O., “Assessment of myelin oligodendrocyte glycoprotein antibodies and magnetic resonance spectroscopy in childhood-onset systemic lupus erythematosus”, Clinical and Experimental Rheumatology, 2022.
E. Sümer, Tek, E., O. Türe, A., Şengöz, M., Dincer, A., Ozcan, A., M. Pamir, N., Özduman, K., and Ozturk-Isik, E., “The effect of tumor shape irregularity on Gamma Knife treatment plan quality and treatment outcome: an analysis of 234 vestibular schwannomas”, Scientific Reports, vol. 12, no. 1, p. 21809, 2022.
S. Cengiz, Arslan, D. Betul, Kicik, A., Erdogdu, E., Yildirim, M., Hatay, G. Hale, Tufekcioglu, Z., Ulug, A. Müfit, Bilgic, B., Hanagasi, H., Demiralp, T., Gürvit, H., and Ozturk-Isik, E., “Identification of metabolic correlates of mild cognitive impairment in Parkinson's disease using magnetic resonance spectroscopic imaging and machine learning”, Magnetic Resonance Materials in Physics, Biology and Medicine, 2022.
S. Cengiz, Yildirim, M., Bas, A., and Ozturk-Isik, E., “ORYX-MRSI: A fully-automated open-source software for proton magnetic resonance spectroscopic imaging data analysis”, International Journal of Imaging Systems and Technology, vol. 32, no. 4, pp. 1068 - 1083, 2022.
G. Turhan, Küçük, H., and Ozturk-Isik, E., “Spatio-temporal convolution for classification of alzheimer disease and mild cognitive impairment”, Computer Methods and Programs in Biomedicine, vol. 221, 2022.
2021
B. Altun, Demirkan, I., Ozturk-Isik, E., Kocaturk, O., Unlu, M. B., and Garipcan, B., “Acoustic Impedance Measurement of Tissue Mimicking Materials by Using Scanning Acoustic Microscopy”, Ultrasonics, vol. 110, 2021.
S. Azamat, Arslan, D. Betul, Erdogdu, E., Kicik, A., Cengiz, S., Eryürek, K., Tufekcioglu, Z., Bilgic, B., Hanagasi, H., Demiralp, T., and , “Detection of visual and frontoparietal network perfusion deficits in Parkinson’s disease dementia”, European Journal of Radiology, vol. 144, p. 109985, 2021.
H. Kilic, Yilmaz, K., Asgarova, P., Kizilkilic, O., Hatay, G. Hale, Ozturk-Isik, E., Yalcinkaya, C., and Saltik, S., “Electrical status epilepticus in sleep: The role of thalamus in etiopathogenesis”, Seizure-European Journal of Epilepsy, vol. 93, pp. 44-50, 2021.
E. Bannier, Barker, G., Borghesani, V., Broeckx, N., Clement, P., Emblem, K. E., Ghosh, S., Glerean, E., Gorgolewski, K. J., Havu, M., Halchenko, Y. O., Herholz, P., Hespel, A., Heunis, S., Hu, Y., Hu, C. P., Huijser, D., M Vayá, dela Iglesia, Jancalek, R., Katsaros, V. K., Kieseler, M. L., Maumet, C., Moreau, C. A., Mutsaerts, H. J., Oostenveld, R., Ozturk-Isik, E., N Espinosa, P. Leone, Pellman, J., Pernet, C. R., Pizzini, F. B., Trbalić, A. Š., Toussaint, P. J., M Castello, Vdi Oleggio, Wang, F., Wang, C., and Zhu, H., “The Open Brain Consent: Informing research participants and obtaining consent to share brain imaging data”, 2021. .
B. Kahraman-Agir, Yegin, K., and Ozturk-Isik, E., “Wearable and Elastic Surface Coil for 1H Magnetic Resonance Imaging”, IEEE Microwave and Wireless Components Letters, vol. 31, no. 5, pp. 517 - 520, 2021.
2020
D. B. Arslan, Gurvit, H., Genc, O., Kicik, A., Eryurek, K., Cengiz, S., Erdogdu, E., Yildirim, Z., Tufekcioglu, Z., Uluğ, A. M., Bilgic, B., Hanagasi, H., Tuzun, E., Demiralp, T., and Ozturk-Isik, E., “The cerebral blood flow deficits in Parkinson's disease with mild cognitive impairment using arterial spin labeling MRI”, The Journal of Neural Transmission, vol. 127, no. 9, 2020.
C. Yildiz, Semercioz, A. S., Yalcinkaya, B. H., Ipek, T. D., and Ozturk-Isik, E., “Entropy Generation and Accumulation in Biological Systems”, Int J Exergy, 2020.
2019
E. Ozturk-Isik, Cengiz, S., Ozcan, A., Yakicier, C., A. Danyeli, E., Pamir, M. N., Özduman, K., and Dincer, A., “Identification of IDH and TERTp mutation status using 1H-MRS in 112 hemispheric diffuse gliomas”, Journal of Magnetic Resonance Imaging, 2019.
A. Kıçik, Tüzün, E., Erdoğdu, E., Bilgiç, B., Tüfekçioğlu, Z., Ozturk-Isik, E., Hanağası, H., and Gürvit, H., “Neuroinflammation mediators are reduced in sera of Parkinson’s disease patients with mild cognitive impairment.”, Arch Neuropsychiatry, 2019.
2018
F. Citak-Er, Firat, Z., Kovanlikaya, I., Ture, U., and Ozturk-Isik, E., “Machine-learning in grading of gliomas based on multi-parametric magnetic resonance imaging at 3T.”, Comput Biol Med., vol. 99, pp. 154-160, 2018.
N. Ozturk, Ozturk-Isik, E., and Ulgen, Y., “Screening post-menopausal women for bone mineral level by bioelectrical impedance spectroscopy of dominant arm.”, J Electr Bioimp, vol. 9, no. 39, pp. 39-47, 2018.
2017
G. H. Hatay, Yildirim, M., and Ozturk-Isik, E., “Considerations in applying compressed sensing to in vivo phosphorus MR spectroscopic imaging of human brain at 3T”, Med Biol Eng ComputMed Biol Eng ComputMed Biol Eng Comput, vol. 55, no. 8, pp. 1303-1315, 2017.
M. M. Cihangiroglu, Ozturk-Isik, E., Firat, Z., Kilickesmez, O., Ulug, A. M., and Ture, U., “Preoperative grading of supratentorial gliomas using high or standard b-value diffusion-weighted MR imaging at 3T”, Diagnostic and Interventional Imaging, vol. 98, no. 3, pp. 261 - 268, 2017.
E. Ozturk-Isik, Marshall, I., Filipiak, P., Benjamin, A. J., Ones, V. G., Ramon, R. O., and Hernandez, M. D. Valdes, “Workshop on reconstruction schemes for magnetic resonance data: summary of findings and recommendations”, Royal Society Open Science, vol. 4, no. 2, p. 160731, 2017.
2015
Ö. Acar, Ozturk-Isik, E., Mut, T., Sağlıcan, Y., Onay, A., Vural, M., Musaoğlu, A., and Esen, T., “Comparison of the trifecta outcomes of robotic and open nephron-sparing surgeries performed in the robotic era of a single institution”, SpringerPlus, vol. 4, no. 1, p. 472, 2015.
2014
H. Cebeci, Aydin, O., Ozturk-Isik, E., Gumus, C., Inecikli, F., Bekar, A., Kocaeli, H., and Hakyemez, B., “Assesment of perfusion in glial tumors with arterial spin labeling; comparison with dynamic susceptibility contrast method”, Eur J Radiol, vol. 83, pp. 1914-9, 2014.
F. Citak-Er, Vural, M., Acar, O., Esen, T., Onay, A., and Ozturk-Isik, E., “Final Gleason score prediction using discriminant analysis and support vector machine based on preoperative multiparametric MR imaging of prostate cancer at 3T”, Biomed Res Int, vol. 2014, p. 690787, 2014.
2012
E. Ozturk-Isik, Pirzkall, A., Lamborn, K. R., Cha, S., Chang, S. M., and Nelson, S. J., “Spatial characteristics of newly diagnosed grade 3 glioma assessed by magnetic resonance metabolic and diffusion tensor imaging”, Transl Oncol, vol. 5, pp. 10-8, 2012.
Y. Li, Xu, D., Ozturk-Isik, E., Lupo, J. M., Chen, A. P., Vigneron, D. B., and Nelson, S. J., “T1 and T2 Metabolite Relaxation Times in Normal Brain at 3T and 7T”, J Mol Imag Dynam, 2012.
2011
I. Park, Chen, A. P., Zierhut, M. L., Ozturk-Isik, E., Vigneron, D. B., and Nelson, S. J., “Implementation of 3 T lactate-edited 3D 1H MR spectroscopic imaging with flyback echo-planar readout for gliomas patients”, Ann Biomed Eng, vol. 39, pp. 193-204, 2011.
J. Tropp, Lupo, J. M., Chen, A., Calderon, P., McCune, D., Grafendorfer, T., Ozturk-Isik, E., Larson, P. E., Hu, S., Yen, Y. F., Robb, F., Bok, R., Schulte, R., Xu, D., Hurd, R., Vigneron, D., and Nelson, S., “Multi-channel metabolic imaging, with SENSE reconstruction, of hyperpolarized [1-(13)C] pyruvate in a live rat at 3.0 tesla on a clinical MR scanner”, J Magn Reson, vol. 208, pp. 171-7, 2011.
2009
M. L. Zierhut, Ozturk-Isik, E., Chen, A. P., Park, I., Vigneron, D. B., and Nelson, S. J., “(1)H spectroscopic imaging of human brain at 3 Tesla: comparison of fast three-dimensional magnetic resonance spectroscopic imaging techniques”, J Magn Reson Imaging, vol. 30, pp. 473-80, 2009.
E. Ozturk-Isik, Chen, A. P., Crane, J. C., Bian, W., Xu, D., Han, E. T., Chang, S. M., Vigneron, D. B., and Nelson, S. J., “3D sensitivity encoded ellipsoidal MR spectroscopic imaging of gliomas at 3T”, Magn Reson Imaging, vol. 27, pp. 1249-57, 2009.
S. Banerjee, Ozturk-Isik, E., Nelson, S. J., and Majumdar, S., “Elliptical magnetic resonance spectroscopic imaging with GRAPPA for imaging brain tumors at 3 T”, Magn Reson Imaging, vol. 27, pp. 1319-25, 2009.
2007
J. A. Osorio, Ozturk-Isik, E., Xu, D., Cha, S., Chang, S., Berger, M. S., Vigneron, D. B., and Nelson, S. J., “3D 1H MRSI of brain tumors at 3.0 Tesla using an eight-channel phased-array head coil”, J Magn Reson Imaging, vol. 26, pp. 23-30, 2007.
A. P. Chen, Cunningham, C. H., Ozturk-Isik, E., Xu, D., Hurd, R. E., Kelley, D. A., Pauly, J. M., Kurhanewicz, J., Nelson, S. J., and Vigneron, D. B., “High-speed 3T MR spectroscopic imaging of prostate with flyback echo-planar encoding”, J Magn Reson Imaging, vol. 25, pp. 1288-92, 2007.
2006
Y. Li, Osorio, J. A., Ozturk-Isik, E., Chen, A. P., Xu, D., Crane, J. C., Cha, S., Chang, S., Berger, M. S., Vigneron, D. B., and Nelson, S. J., “Considerations in applying 3D PRESS H-1 brain MRSI with an eight-channel phased-array coil at 3 T”, Magn Reson Imaging, vol. 24, pp. 1295-302, 2006.
S. Banerjee, Ozturk-Isik, E., Nelson, S. J., and Majumdar, S., “Fast magnetic resonance spectroscopic imaging at 3 Tesla using autocalibrating parallel technique”, Conf Proc IEEE Eng Med Biol Soc, vol. 1, pp. 1866-9, 2006.
E. Ozturk, Banerjee, S., Majumdar, S., and Nelson, S. J., “Partially parallel MR spectroscopic imaging of gliomas at 3T”, Conf Proc IEEE Eng Med Biol Soc, vol. 1, pp. 493-6, 2006.
P. Pels, Ozturk-Isik, E., Swanson, M. G., Vanhamme, L., Kurhanewicz, J., Nelson, S. J., and Van Huffel, S., “Quantification of prostate MRSI data by model-based time domain fitting and frequency domain analysis”, NMR Biomed, vol. 19, pp. 188-97, 2006.
E. Ozturk-Isik, Crane, J. C., Cha, S., Chang, S. M., Berger, M. S., and Nelson, S. J., “Unaliasing lipid contamination for MR spectroscopic imaging of gliomas at 3T using sensitivity encoding (SENSE)”, Magn Reson Med, vol. 55, pp. 1164-9, 2006.